PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0031900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1141aa    MW: 126678 Da    PI: 6.5122
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0031900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.4e-21148249199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    
  ORGLA02G0031900.1 148 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV-- 235
                        99*****************************954.4444.49**********************************************99.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  ORGLA02G0031900.1 236 RDEKHQLLLGIRRA 249
                        55788889999997 PP

2Auxin_resp117.61.1e-38274357183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  ORGLA02G0031900.1 274 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 357
                        79*********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575132No hitNo description
SuperFamilySSF1019361.31E-41137277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-39140263IPR015300DNA-binding pseudobarrel domain
CDDcd100179.20E-18147248No hitNo description
SMARTSM010196.7E-21148250IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912148250IPR003340B3 DNA binding domain
PfamPF023621.1E-18148249IPR003340B3 DNA binding domain
PfamPF065071.5E-33274357IPR010525Auxin response factor
PfamPF023093.8E-910051093IPR033389AUX/IAA domain
PROSITE profilePS5174529.25810081092IPR000270PB1 domain
SuperFamilySSF542773.83E-710261087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1141 aa     Download sequence    Send to blast
MASMKQQQTP ASSAVTAAAA ASSSATAAVA ACEGERKAAA INSELWHACA GPLVSLPPVG  60
SLVVYFPQGH SEQVAASMQK DVDAHVPSYP NLPSKLICLL HGVNLHADPD TDEVYAQMTL  120
QPVNTYGKEA LQLSELALKQ ARPQMEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS  180
MQPPAQELQA RDIHDNVWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVIVVRDEKH  240
QLLLGIRRAN RQPTNISSSV LSSDSMHIGV LAAAAHAAAN SSPFTIFYNP RASPTEFVIP  300
FAKYQKALYS NQISLGMRFR MMFETEELGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW  360
DESAAGERRN RVSIWEIEPV AAPFFLCPQP FFGVKRPRQL DDESDMENLF KRAMPWLGEE  420
VCIKDTQNQN STAPGLSLVQ WMNMNRQQSS SLANTAAQSE YLQALGNPAM QNLAADELAR  480
QLYVQNNLLQ QNCIQFNSPK LPQQMQTMND LSKAAIPLNQ LGAIINPQDQ KQDAVNHQRQ  540
QNSIQVIPLS QAQSNLVQAQ VIVQNQMQQQ KPSPTQNPQR INGQRLLLSH QQQDQNLQLQ  600
QQLLLQQKQQ LQQQQQQQQN QQQLNKSLGQ LVNLASQQSK LFDEELQLQI LQKLQQQSLM  660
SQSTSTLSQP PLIQEQQKLI TDMQKQLSNS HSLAQQQMMP QQEIKPSLQA TPLLPTVQQE  720
QQQKLLQKQV SLADVSGVAF QPISSTNVIP KTGGAMIISG ATQSVVTEEM PSCSTSPSTA  780
NGNHFTQSTK NRHCINTERL PPSTAPMLIP TSIDAVTATP LMTKELPKPN NNVKQSVVNS  840
KLPNVAPGPQ NCINNALQTD NLETSSSATS LCPSRTDGLV HQGFPSSNFN QHQMFKDALP  900
DVEMEGVDPS NSGLFGINND NLLGFPIETE DLLINALDSV KYQNHISTDV ENNYPMQKDA  960
LQEISTSMVS QSFGQSDMAF NSIDSAINDG AFLNKNSWPA APPLQRMRTF TKVYKRGAVG  1020
RSIDIGRYSG YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN  1080
CVRCIRILSP QEVQQMSLDG DLGSNVLPNQ ACSSSDGVNG WRPRCDQNPR NPSIGPYDQF  1140
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1663437845388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627049.10.0PREDICTED: auxin response factor 5 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLI1NX630.0I1NX63_ORYGL; Auxin response factor
STRINGORGLA02G0031900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19